Dream a plasmid.

Annotate modules and the interactions between them. Assemble plasmids from inventory parts with auto-routed cloning workflows, or describe a plasmid and the closest match is picked for you. Verify designs against module-interaction rules, and design CRISPR/Cas9 guides and primers around any feature on the map.

Design a Gibson assembly to build my target plasmid from inventory
One-click demos
Length: 523 bpAnnotations: 12
Tip: Shift+click to extend a selection. ⌘C copy, ⌘V paste, ⌘Z undo, ⌘⇧Z redo, ⌘F find. Delete removes selected bp.
Plasmid Visualizer
1.0x
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523 bp
1100200300400500Fragment_2Fragment_3Fragment_1
102030GCCTCCTGCTGGTCCCAAGTTGTGAAATCTTToverlap FragmenFragment_3 REV Fragment_1 FWD primer (38bp)Fragment_1CGGAGGACGACCAGGGTTCAACACTTTAGAAA
405060ATCGTGTTTGGTCAGTTCCAGGCGATGTTCAAoverlap Fragment_…Fragment_3 REV pr…Fragment_1 FWD pr…Fragment_1TAGCACAAACCAGTCAAGGTCCGCTACAAGTT
708090CGAAATGAAATTCTGGCAGCTTGACAGGTTTToverlap Fragment_…Fragment_3 REV pr…Fragment_1 FWD pr…Fragment_1GCTTTACTTTAAGACCGTCGAACTGTCCAAAA
100110120TTGGCTTTATACGTCGTTTTGAAATCAACACGoverlap Fragment_…Fragment_3 REV pr…Fragment_1 FWD pr…Fragment_1FragmAACCGAAATATGCAGCAAAACTTTAGTTGTGC
130140150160ATGATGACCGCCTCCTTTCACTTGCCTTCACCoverlap Fragment_…Fragment_3 REV pr…Fragment_1 FWD pr…Fragment_1Fragment_1 REV primer (44bp)overlap Fragment_1-Fragment_2 (30bp, desiFragment_2 FWD primer (34bp)Fragment_2TACTACTGGCGGAGGAAAGTGAACGGAAGTGG
170180190TTTACCCTCGATCGTAAAATCATGGCCATTGAFragment_1 REV proverlap Fragment_Fragment_2 FWD primer (34Fragment_2AAATGGGAGCTAGCATTTTAGTACCGGTAACT
Annotations (12)
Note: Double-clicking split annotations (spanning lines or origin) may select the wrong annotation. Use this panel for reliable editing.